Formatting database for BLAST

Unformatted databases can be downloaded from ftp://ftp.ncbi.nlm.nih.gov/blast/db/FASTA/, while formatted ones from ftp://ftp.ncbi.nlm.nih.gov/blast/db/.
Command to use to format a database:
formatdb -i input_db -p F -o T for nucleotide
formatdb -i input_db -p T -o T for protein

For yeast.nt use: formatdb -i yeast.nt -p T -o T
For nr use: formatdb -i nr -p T -o T

Trying to submit a simple job to new installation of Globus, I got the following error:

globusrun-ws -F wave.cis.uab.edu -submit -s -c /bin/date
Delegating user credentials...Done.
Submitting job...Done.
Job ID: uuid:a8109b36-c203-11db-a449-00123f2a7564
Termination time: 02/22/2007 23:31 GMT
Current job state: Failed
Destroying job...Done.
Cleaning up any delegated credentials...Done.
globusrun-ws: Job failed: Error code: 201
Script stderr:
sudo: sorry, you must have a tty to run sudo


If sudoers file has properly been edited and contains necessary lines and this happend, it is due to default Fedora sudoers setup. Edit sudoers file (Command: /usr/sbin/visudo -f /etc/sudoers) and comment out the following line:
Defaults requiretty